CONTRAST - CONditionally TRAined Search for Transcripts Tool name | CONTRAST - CONditionally TRAined Search for Transcripts |
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URL | http://contra.stanford.edu/contrast/ |
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Important features | Predicts protein-coding genes from a multiple genomic alignment. It is designed for de novo predictions. It can also incorporate information from EST alignments. |
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Citations | Gross SS, Do CB, Sirota M, Batzoglou S. CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction. Genome Biol. 2007;8(12):R269. PubMed PMID: 18096039; PubMed Central PMCID: PMC2246271.
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Year of publication | 2007 |
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Rank by usage frequency | 1 |
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Comments | Predicitions downloadable or can be browsed by using UCSC genome browser. |
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Function | Species, Finds alternative splicing in human, Finds alternative splicing in rat, Finds alternative splicing in mouse, Finds alternative splicing in chicken, Finds alternative splicing in zebrafish, Finds alternative splicing in Drosophila |
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Category | Downloadable |
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Input file format | |
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Output file format | |
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Limitation | |
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